rs236682128 SNP Detail

Summary

• ID
  rs236682128
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157404797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGAGATAA AGGACTATTT
  CTCATCCGCA ATGAGAAGAG TGGAATTCAT CTGTCCCAGA ATAAGGGACA TTTTCCCTTC
  CCCACGATGA TGGGTGAATT TATTTGGTGG TGCCGAGATA AGGTACCATG GCAGGTTTTC
  TATCTGGGAA AGATGGAGAG AAAATAACTG GGACTGGCCC TCTAAATGGA ATACTAAGGG
  Y
  CATACGGGTT AATTTAAGAA TATAAAGCTA TACCACAGAT CTCTCTACCC AGGAGCCCCA
  GGAAATGAAT GCTGGGCAAG AAGAGGGGGT GGTGGCTGGG ACAATGAGCA TGAGGTGTGG
  CTTGGCCCCT CCTCCACCAA GCTTAATGCT CCAGACCCCA GGATCACCCT AAGGCTGGCC
  ATCCTGTCTT GATTTTCCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356262057	MGP_WTSI_2_157388613	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	C	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236682128					SNP	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	C	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356262057	MGP_WTSI_2_157388613	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157404797 () rs orientation: forward

Symbol	Name	Function Class
Blcap	bladder cancer associated protein	within coordinates
Cpgi12576	CpG island 12576	1178 bp distal
Gm56190	predicted gene, 56190	430 bp upstream
Nnat	neuronatin	355 bp downstream
Rr568544	regulatory region 568544	within coordinates
Tssr721	transcription start site region 721	420 bp upstream
Tssr21273	transcription start site region 21273	1392 bp downstream
Tssr21274	transcription start site region 21274	1146 bp downstream
Tssr21275	transcription start site region 21275	1094 bp downstream
Tssr21276	transcription start site region 21276	981 bp downstream
Tssr21277	transcription start site region 21277	963 bp downstream
Tssr21278	transcription start site region 21278	930 bp downstream
Tssr21279	transcription start site region 21279	845 bp downstream
Tssr21280	transcription start site region 21280	733 bp downstream
Tssr21281	transcription start site region 21281	659 bp downstream
Tssr21282	transcription start site region 21282	586 bp downstream
Tssr21283	transcription start site region 21283	557 bp downstream
Tssr27183	transcription start site region 27183	1994 bp upstream
Tssr27184	transcription start site region 27184	1904 bp upstream
Tssr27185	transcription start site region 27185	993 bp upstream
Tssr27186	transcription start site region 27186	863 bp upstream