rs236684176 SNP Detail

Summary

• ID
  rs236684176
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127870908 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCAGGTG GATTTCTATG
  TGAGCTGGAA GCCAGCCAGG GCTACATAGA GACCTCGTCT CAACAAAAGA CTGCACACGC
  AAAATTCACT GTGTTGAGGT TTTGCAGAGT ATTTTAAACT TTTGATCCTG TCACTGACTT
  CAAAGTGCTG GATTAAGGGC TCGAACTATT TGCGATTTTA TATGGTGCTG TGGATGGAAC
  Y
  CAGGACTTCT TGCATGCTGG GCAATCCCTC TACCAACCGA GCTACCTTCC AAGGCTCAAG
  TGTGGGTTTT TAATGTAGTC CTGCGACCCT AAAAACGGGT GAACTTTAAA ATATCTGAGA
  AGTGCTCAGA GTATCAGGCG AAGCGAATTG TGTTTATGCT CTGTGTTTGA GGTTTTTCCC
  TGGAGAGAAC CGAGCTTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382196988	MGP_WTSI_10_127472095	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236684176					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382196988	MGP_WTSI_10_127472095	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127870908 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2380	CpG island 2380	229 bp proximal
Gm66417	predicted gene, 66417	within coordinates
Gm66418	predicted gene, 66418	999 bp downstream
Naca	nascent polypeptide-associated complex alpha polypeptide	536 bp upstream
Rr224438	regulatory region 224438	within coordinates
Rr385474	regulatory region 385474	within coordinates
Tssr96285	transcription start site region 96285	1769 bp downstream
Tssr96286	transcription start site region 96286	1687 bp downstream
Tssr96287	transcription start site region 96287	1431 bp downstream
Tssr96288	transcription start site region 96288	1364 bp downstream
Tssr96289	transcription start site region 96289	1345 bp downstream
Tssr96290	transcription start site region 96290	291 bp upstream
Tssr96291	transcription start site region 96291	300 bp upstream
Tssr96292	transcription start site region 96292	324 bp upstream
Tssr96293	transcription start site region 96293	441 bp upstream
Tssr96294	transcription start site region 96294	548 bp upstream
Tssr96295	transcription start site region 96295	565 bp upstream
Tssr96296	transcription start site region 96296	586 bp upstream
Tssr96297	transcription start site region 96297	598 bp upstream
Tssr96298	transcription start site region 96298	1179 bp upstream