rs236687204 SNP Detail

Summary

• ID
  rs236687204
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117113826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCACAAAGC CCTGCAGCTC
  ACACGACTGC TGTTTCCCAA GATCAACTGG TCTCCTATAA GCAGTTCTTG TATTTTTATT
  CACACAGGTC TGATTAAGAT GAATTCCAAT GGAACTCAAT GTGAATCACT TCCTGGCTGA
  AGAACTGACC TACAGAGGTG TCTGTGTGGT GATCATTGTG TTGGCTGACT GTCACCAGCG
  W
  CCAGGGCTGT GCTGACTGAC AAGGGAGACT TTGCACAACA CAGCATCAGC TGAAGCTTGT
  GAGGAGGAAG TCTCTGTTTT GCCCTGTTTC TGCTGAAGTC CTGTGACTTA GAGGGGAAAT
  CGAGGGAATG TGACCTCTCT CATATCTACT CCTACAGTGA GAAAGAGACC GAATGAGCTG
  CAGTAGAAGC ACACCGCGGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381913468	MGP_WTSI_10_116714977	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236687204					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381913468	MGP_WTSI_10_116714977	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117113826 () rs orientation: forward

Symbol	Name	Function Class
Gm67237	predicted gene, 67237	within coordinates
Lyz2	lysozyme 2	within coordinates
Tssr95904	transcription start site region 95904	581 bp downstream
Tssr95905	transcription start site region 95905	513 bp downstream
Tssr95906	transcription start site region 95906	459 bp downstream
Tssr95907	transcription start site region 95907	426 bp downstream
Tssr95908	transcription start site region 95908	245 bp downstream
Tssr95909	transcription start site region 95909	155 bp downstream
Tssr95910	transcription start site region 95910	9 bp downstream
Tssr95911	transcription start site region 95911	60 bp upstream
Tssr95912	transcription start site region 95912	155 bp upstream
Tssr95913	transcription start site region 95913	215 bp upstream
Tssr99410	transcription start site region 99410	469 bp upstream
Tssr99411	transcription start site region 99411	391 bp upstream
Tssr99412	transcription start site region 99412	285 bp upstream
Tssr99413	transcription start site region 99413	232 bp upstream
Tssr99414	transcription start site region 99414	118 bp upstream
Tssr99415	transcription start site region 99415	58 bp upstream
Tssr99416	transcription start site region 99416	within coordinates
Tssr99417	transcription start site region 99417	77 bp downstream
Tssr99418	transcription start site region 99418	91 bp downstream
Tssr99419	transcription start site region 99419	106 bp downstream
Tssr99420	transcription start site region 99420	178 bp downstream
Tssr99421	transcription start site region 99421	252 bp downstream
Tssr99422	transcription start site region 99422	984 bp downstream