rs236692358 SNP Detail

Summary

• ID
  rs236692358
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:77441284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGGACAC TCTTGACCCC
  TTAGCCAGGG CTCCCGATGG ATCTTCCAGC TCAAGCTTCC CTTGTTTTGC TTATCTAGTT
  GACTCCTTGG GCATGTTATT AAACTTCTAG GCATCTTGGT GTGCTGTGTA AAATGGGTTA
  TTAGTGTCCA CAATAGCATT CCAGAAACAG CAAATGGTAG GTCAGAAGGG AAGCTTTCTG
  K
  GCCTGTCACT CTCACCCACC CAAGCCACCT AGTGGTTACT TTGGGACTAC GTAAGGAGGG
  AGAAAGGCAG CTAGATAGTG AGAATGAAGG GGAAGAGCTT GTCCTTCTGG AGAGCCATCT
  TGGGAATGGC CCTTGTGGAG GCTGGTCCAC CCCATCCAGG AAATCAAATG AAAAAAGATG
  AAATGGGAGC ATGTGCTGGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380971329	MGP_WTSI_10_77068195	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	G	G	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236692358					SNP	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	G	G	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380971329	MGP_WTSI_10_77068195	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77441284 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1760	CpG island 1760	80 bp proximal
D10Jhu54	DNA segment, Chr 10, Johns Hopkins University 54	681 bp distal
Gm49325	predicted gene, 49325	747 bp upstream
Rr384959	regulatory region 384959	1512 bp downstream
Rr402005	regulatory region 402005	966 bp upstream
Rr434545	regulatory region 434545	1187 bp distal
Rr434546	regulatory region 434546	157 bp proximal
Rr434547	regulatory region 434547	1132 bp proximal
Sumo3	small ubiquitin-like modifier 3	647 bp upstream
Tssr94265	transcription start site region 94265	594 bp upstream
Tssr94266	transcription start site region 94266	767 bp upstream
Tssr94267	transcription start site region 94267	794 bp upstream
Tssr94268	transcription start site region 94268	1128 bp upstream
Tssr94269	transcription start site region 94269	1211 bp upstream
Tssr94270	transcription start site region 94270	1245 bp upstream
Tssr98239	transcription start site region 98239	1663 bp downstream