rs236707528 SNP Detail

Summary

• ID
  rs236707528
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135389147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCCT GTGGGAACTC TGGATCTCTG
  M
  AGGGGGGGTG GGGGGGGAAG GTTCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LP/J	MOLF/EiJ	PWK/PhJ	SEA/GnJ
ss914993352	MGP_WTSI_1_135461409	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	C	A	A	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LP/J	MOLF/EiJ	PWK/PhJ	SEA/GnJ
rs236707528					SNP	A	A	A	A	A	A	A	A	A	C	A	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss914993352	MGP_WTSI_1_135461409	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135389147 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nav1	neuron navigator 1			Intron
				Noncoding-Transcript-Variant
Rr419148	regulatory region 419148			684 bp distal
Rr419149	regulatory region 419149			within coordinates
Rr419150	regulatory region 419150			45 bp distal
Rr419151	regulatory region 419151			938 bp proximal