rs236719518 SNP Detail

Summary

• ID
  rs236719518
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122969186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTAGGCT AAGAGGTCAA
  ATCTACATTT TTTTTCATTT GCATCAAGAT GTCAAGCTGT ATGTGTACAG GGCTCTTTCA
  TCTAATGTGA ACTTGTGGAC AAGAAAGAGC TAGGAAGAAA TTGTCCAAGA AGAGTTCTTC
  AGCTAATTCC TAGCTGCTTC TGTCCTGCCC AGTATTATGA GAAATCTAAA AGCAACCTGA
  R
  CAAATGGGTG GATTTCTGTT CATCAAAGAT TTGAGAGTGT ATGAAAAATT TTTAAAAAAT
  GCATGAAAAG TCGTATATTT AGGATGCTTT ACTCATTTGT TTACACACTC AGAGTAAAGT
  AATAGTAATA ATATAGTAAT AGCACACAAT AGTGTATTAC AGATGATGTG TCAGACCAAG
  TCCAGGAAGA ACACAGACTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321934845	CHEV_6_122942245	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236719518					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122969186 () rs orientation: forward

Symbol	Name	Function Class
Clec4a4	C-type lectin domain family 4, member a4	within coordinates
D6Mit300	DNA segment, Chr 6, Massachusetts Institute of Technology 300	771 bp distal
Tssr58744	transcription start site region 58744	1919 bp downstream
Tssr58745	transcription start site region 58745	1862 bp downstream