rs236720355 SNP Detail

Summary

• ID
  rs236720355
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:76800544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTGTGGTG CGGATTAGAT
  GGTGGAATGG AAATTTGGCA GCACTTTAAG GTGCGGCGTT AAAATGTGAG TTTCCATAAC
  CTATCTCGAG GGTACATCAC GAACCTGAAG CCAATTTGTT TTAAATATCA ATAAGCCCCA
  CATTTACTTA ATTCTAAGTA AGCTAAAGAT CTGTGTGCCC CATCTCATTT TCAGGCATGG
  T
  GGGGGGGAGG AGAGACAGTA AAAGTAACTC CCTTAAAACA TCGCCACAGA AAGGACAGTG
  TGTTCCCAGC TTCAGTTGGG CATGAGAGAC TATTTTGTGG GTGTTACATG GTTTTAGTAA
  CCGAATGCTT GTGCCATTCT CGACTAAAAA TAACCCACAC GTCCCCCTCC TTTTGTCCTC
  CCCACCCTCC CCCTTGTCCC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	WSB/EiJ	ZALENDE/EiJ
ss354535446	MGP_WTSI_2_76808257	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	WSB/EiJ	ZALENDE/EiJ
rs236720355					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354535446	MGP_WTSI_2_76808257	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76800544 () rs orientation: forward

Symbol	Name	Function Class
Rr559723	regulatory region 559723	1068 bp distal
Rr559724	regulatory region 559724	within coordinates
Rr559725	regulatory region 559725	702 bp proximal
Tssr18508	transcription start site region 18508	1729 bp downstream
Tssr24820	transcription start site region 24820	1730 bp upstream
Tssr24821	transcription start site region 24821	1698 bp upstream
Tssr24822	transcription start site region 24822	1668 bp upstream
Tssr24823	transcription start site region 24823	1013 bp upstream
Tssr24824	transcription start site region 24824	974 bp upstream
Tssr24825	transcription start site region 24825	519 bp upstream
Tssr24826	transcription start site region 24826	479 bp upstream
Tssr24827	transcription start site region 24827	458 bp upstream
Tssr24828	transcription start site region 24828	375 bp upstream
Tssr24829	transcription start site region 24829	263 bp upstream
Ttn	titin	within coordinates