rs236724246 SNP Detail

Summary

• ID
  rs236724246
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:153567163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGTCCGAG GAGCGGGGCT
  TCGTCCTCCG GGGCGACGAG TAGCGAAGCG GGCGGCTCCG CAAGCCGTGC GAGGATCTAG
  CCTGCAGCCG GAGCTGCGAG GCTGTGATCG GTGTTGCCCG GGGGTTGAGA AGATCGCCCC
  TCTGGCCCAC GCGGGTCGCC TCCACGCGCC GCCGGGTCGA GGGGCCTCTG TCCCAGGTTC
  Y
  GACACCGATC AAGTTGCTGG AGAGCTCCGT CTAAGCGCTC GCTCTGCAGA CAGCCGCGGC
  CCGGAGACTG CCAGAAGGCG GGCAGGGGAG GCGCGGGGCG AAGAAGCGTG GAGCGCGGGG
  CGTGGGGACG CGCGGCGGCG CCGCCGCGCG GAGGAGGCGC GCGGGGATCC CGGGCCCCGC
  CGCCCGCGCC CACCGCGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363742884	MGP_WTSI_4_152856815	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236724246					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363742884	MGP_WTSI_4_152856815	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:153567163 () rs orientation: forward

Symbol	Name	Function Class
Ajap1	adherens junction associated protein 1	within coordinates
Cpgi15422	CpG island 15422	1760 bp distal
Cpgi15423	CpG island 15423	within coordinates
Gm69122	predicted gene, 69122	337 bp upstream
Rr605998	regulatory region 605998	within coordinates
Rr605999	regulatory region 605999	95 bp proximal
Rr606000	regulatory region 606000	384 bp proximal
Rr606001	regulatory region 606001	1890 bp proximal
Tssr44844	transcription start site region 44844	62 bp downstream
Tssr44845	transcription start site region 44845	233 bp downstream
Tssr44846	transcription start site region 44846	1265 bp downstream