rs236725727 SNP Detail

Summary

• ID
  rs236725727
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16185573 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAAA GGCACACTGG CTATCTGTGT
  Y
  TCTTGTCTTT TCTCAGCTGT AACGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322110694	CHEV_7_17036997	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236725727					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16185573 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18377	CpG island 18377	1126 bp proximal
Rr400123	regulatory region 400123	969 bp upstream
Rr642666	regulatory region 642666	510 bp proximal
Rr642667	regulatory region 642667	883 bp proximal
Tmem160	transmembrane protein 160	1294 bp upstream
Tssr64613	transcription start site region 64613	1279 bp upstream
Tssr64614	transcription start site region 64614	1376 bp upstream