rs236729185 SNP Detail

Summary

• ID
  rs236729185
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:11890079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCCTCCGC AGGCTCCAGA
  GCCTTGTGCT GGCCTTCAGT GGTGTACCTC AGGGAGGGTC CCCACAGAGC ATTGCAGTTA
  GAAAGGGGAC CATCTCCAGC AGCTCACTTC CCAGCCCTGA CCTACTTGGG ATTCTTGCAA
  CACCTGGAAA ATACTGAAAC ATATGGCAGT TTCCAGCAAG GAGCAAAAGG AAGGTTGTCA
  Y
  TGTCACAGCC CCCTTCCAAG GGCATGCTTG CACTGTGATA AGCAGAAGGG GCCCACTCTG
  AGGATGGAGG CATAGGACTC ACAGGGCCTT GTTCCTTCTC CTGTGGATAG AGGGGACCTT
  GTTTTGTTCA TGGTTGCACC CTAGTAGTGT TTGCGAAAAC ACTCCCAGAA AACAAAAGTC
  ACATGGCGAA ATTTAAATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322494111	CHEV_8_11840079	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236729185					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:11890079 () rs orientation: forward

Symbol	Name	Function Class
Gm15875	predicted gene 15875	within coordinates
Rr659647	regulatory region 659647	1152 bp proximal
Tex29	testis expressed 29	409 bp upstream
Tssr76253	transcription start site region 76253	422 bp upstream
Tssr76254	transcription start site region 76254	435 bp upstream
Tssr76255	transcription start site region 76255	489 bp upstream