rs236731101 SNP Detail

Summary

• ID
  rs236731101
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84510718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAACTACTA TTTATAGAAT
  CAAAATGGGT TCATCCATTG AGTTTTAACT TTCAAAAATC ATAAAGTACC ATCCTAAATA
  TCTGAGATTT CTTGAATTGC CTAGTGACCT GTGGGATGTA CGTCAGAATA TTACCCAGAA
  CTGAAGTTGT GTCCTTTGAA CTTCAGCATT GTAGAACTAT GAACCGTGGC TGTGTTAAAA
  R
  TGATACATGT ATTCAAATAT TTCCACAGAA TTTAAAGTTT GATTTTATAA TTAGTTTTTA
  AATTGCAAAC CTTACAAAAA TTTTCCAAAA TTTACTTAGA AGCATTTCAG AGCTCTTTTC
  TTTCAAAGCT GAAGTCTACC TTGCCTTCAG ATTCATAATC GTTCACTCTA CTTTATAACT
  AACTGTGTGC GTACACACAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325261447	CHEV_16_84714075	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236731101					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84510718 () rs orientation: forward

Symbol	Name	Function Class
Mir155	microRNA 155	310 bp upstream
Mir155hg	Mir155 host gene (non-protein coding)	within coordinates
Rr404941	regulatory region 404941	495 bp downstream
Rr518521	regulatory region 518521	183 bp distal
Rr518522	regulatory region 518522	within coordinates
Tssr139172	transcription start site region 139172	1970 bp downstream
Tssr139173	transcription start site region 139173	372 bp upstream
Tssr139174	transcription start site region 139174	1155 bp upstream
Tssr139175	transcription start site region 139175	1243 bp upstream
Tssr139176	transcription start site region 139176	1779 bp upstream