rs236737598 SNP Detail

Summary

• ID
  rs236737598
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115219242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACATGTCA CCTCTTTTGT
  GAAGTGTCCT TTGACTTTCT GAGGCTAAAT TAGGTCTCTC TGAAAGTCTT TTCTGTGGCA
  CTCAACAGAA ATTATGCCGC ACTCCTCTAT TCAATTCTAA AGTCCCCGAG GGTAAGAACT
  ATCTACATCA TTAGCATAAT GTCCGGCAAT TAGGGACCCA GTGTACATTA GCTGTAAGAA
  Y
  GAATAAAGCA CTACATTTGC ATGAAATACT TTAAAAACAA ACATCAGAGG GATTTTGAAA
  GTGGCAGCTT TTAGTTAGGG GATGCACGTA GTAACAGTGA GGTAGGAAAA AGAGCAAAGA
  TATTTCTAAG ATCACAAGGT ATAATGGTAC AGCATATAAA ATCAGAACTG TTTTCAGTTT
  AGTTTTCAGT ATTTCTTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381866112	MGP_WTSI_10_114820393	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236737598					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381866112	MGP_WTSI_10_114820393	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115219242 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2206	CpG island 2206	698 bp proximal
Rr402239	regulatory region 402239	1391 bp upstream
Rr439213	regulatory region 439213	within coordinates
Rr439214	regulatory region 439214	956 bp proximal
Rr439215	regulatory region 439215	1063 bp proximal
Rr439216	regulatory region 439216	1622 bp proximal
Rr439217	regulatory region 439217	1885 bp proximal
Thap2	THAP domain containing, apoptosis associated protein 2	within coordinates
Tssr95813	transcription start site region 95813	580 bp upstream
Tssr95814	transcription start site region 95814	1584 bp upstream
Tssr95815	transcription start site region 95815	1614 bp upstream
Tssr95816	transcription start site region 95816	1708 bp upstream
Tssr99330	transcription start site region 99330	989 bp downstream
Tssr99331	transcription start site region 99331	1000 bp downstream
Tssr99332	transcription start site region 99332	1051 bp downstream
Tssr99333	transcription start site region 99333	1139 bp downstream
Tssr99334	transcription start site region 99334	1179 bp downstream
Tssr99335	transcription start site region 99335	1414 bp downstream
Zfc3h1	zinc finger, C3H1-type containing	1622 bp upstream