rs236743199 SNP Detail

Summary

• ID
  rs236743199
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:105244643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATACACAC ACACACACAC
  ACACACACAC ACACACACAC ACACACATAC ACACACACAC ACTGGGTAGG AGGAATGTGG
  GCTTCTCCTG TTTGAGGGTA ATGGGAAGAG TCACACCTCA GATGCTGGAG CACAGAGTTA
  AGGTGGGAGA TGAGCATATG AGACCAACAA GCTCAGACAG CACAGATAAA TTCCAGTGGA
  Y
  CCCAGGGGCT GGGGATTTCT TACCTCTGCC AGGGCAGGAT ACGAAGTAGT CACGGGCATC
  CAGAGGGTAT CTGGGAGGCA CCTCTCCTGT GACAGGGTTG AATCGCAGGA ACTTGTTACC
  CTGGAAGCAG TAGTAGCGTT CAAGCCACCT CAAGGCCGCA GTGCAATTCC CAACAGTTGA
  CCAGGAACGT TCCTTTTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372621633	MGP_WTSI_7_112743950	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	C	T	T	T	C	T	C	T	T	T	T	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236743199					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	C	T	T	T	C	T	C	T	T	T	T	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372621633	MGP_WTSI_7_112743950	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:105244643 () rs orientation: forward

Symbol	Name	Function Class
Hpx	hemopexin	within coordinates
Tssr68381	transcription start site region 68381	842 bp upstream
Tssr74058	transcription start site region 74058	229 bp upstream
Tssr74059	transcription start site region 74059	93 bp downstream
Tssr74060	transcription start site region 74060	104 bp downstream
Tssr74061	transcription start site region 74061	133 bp downstream
Tssr74062	transcription start site region 74062	171 bp downstream
Tssr74063	transcription start site region 74063	184 bp downstream
Tssr74064	transcription start site region 74064	209 bp downstream
Tssr74065	transcription start site region 74065	236 bp downstream
Tssr74066	transcription start site region 74066	887 bp downstream
Tssr74067	transcription start site region 74067	926 bp downstream
Tssr74068	transcription start site region 74068	937 bp downstream
Tssr74069	transcription start site region 74069	979 bp downstream