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rs236743840 SNP Detail
Summary
  • ID
    rs236743840
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr7:44127083 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTTCCCTTGC TCCCTATTTT
TTCTATCCTT CCATTTTCTT CCTTCATCTC TTCCATCTTT TCTTCCTCTA TCTTTCTTCT
CCTCCCCTTC TATTTTTTCT CTTCTATTTT CTCCTCATCA TCGTCCTATT TCATTTCCTC
TTCCTCATCC TTCATACCTT CCTCCTGTAT CTCCTGTTCA TCCTTCTACA TTTCCTCTTC
R
TATCTATTTC CTCCTCCTCC TCAATCTCCT ACCTATACTT CATCTCCTCT TTCTCTATCT
CCTCCTACTC TTCTACATCC CTTTACTTCT CCATCTCCTC CTCTGTTTTC TTCTCCATCT
GCTCTCCCTT TTCTTTCCAT CCATATCATT CCTTATCTAT CTCTCTTCTC TGCTGTTTCC
TCTGCCATCT TTCTCAGTTT                                            

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss371156089 MGP_WTSI_7_51733029 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs236743840 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss371156089 MGP_WTSI_7_51733029 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44127083 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Rr646102 regulatory region 646102 2000 bp distal
Tssr2222 transcription start site region 2222 1305 bp downstream
Tssr2223 transcription start site region 2223 1126 bp downstream
Tssr2224 transcription start site region 2224 280 bp downstream
Tssr2225 transcription start site region 2225 240 bp downstream
Tssr2226 transcription start site region 2226 279 bp upstream
Tssr2227 transcription start site region 2227 1352 bp upstream
Tssr66194 transcription start site region 66194 1956 bp downstream
Tssr66195 transcription start site region 66195 1905 bp downstream
Tssr66196 transcription start site region 66196 1872 bp downstream
Tssr66197 transcription start site region 66197 1727 bp downstream
Tssr66198 transcription start site region 66198 1696 bp downstream
Tssr66199 transcription start site region 66199 1686 bp downstream
Tssr66200 transcription start site region 66200 1663 bp downstream
Tssr66201 transcription start site region 66201 1645 bp downstream
Tssr66202 transcription start site region 66202 1630 bp downstream
Tssr66203 transcription start site region 66203 1608 bp downstream
Tssr66204 transcription start site region 66204 1552 bp downstream
Tssr66205 transcription start site region 66205 1528 bp downstream
Tssr66206 transcription start site region 66206 1515 bp downstream
Tssr66207 transcription start site region 66207 1495 bp downstream
Tssr66208 transcription start site region 66208 1481 bp downstream
Tssr66209 transcription start site region 66209 1450 bp downstream
Tssr66210 transcription start site region 66210 1417 bp downstream
Tssr66211 transcription start site region 66211 1377 bp downstream
Tssr66212 transcription start site region 66212 1334 bp downstream
Tssr66213 transcription start site region 66213 1319 bp downstream
Tssr66214 transcription start site region 66214 1287 bp downstream
Tssr66215 transcription start site region 66215 1257 bp downstream
Tssr66216 transcription start site region 66216 1210 bp downstream
Tssr66217 transcription start site region 66217 1138 bp downstream
Tssr66218 transcription start site region 66218 1084 bp downstream
Tssr66219 transcription start site region 66219 1042 bp downstream
Tssr66220 transcription start site region 66220 1008 bp downstream
Tssr66221 transcription start site region 66221 989 bp downstream
Tssr66222 transcription start site region 66222 936 bp downstream
Tssr66223 transcription start site region 66223 869 bp downstream
Tssr66224 transcription start site region 66224 846 bp downstream
Tssr66225 transcription start site region 66225 826 bp downstream
Tssr66226 transcription start site region 66226 813 bp downstream
Tssr66227 transcription start site region 66227 772 bp downstream
Tssr66228 transcription start site region 66228 769 bp downstream
Tssr66229 transcription start site region 66229 756 bp downstream
Tssr66230 transcription start site region 66230 736 bp downstream
Tssr66231 transcription start site region 66231 701 bp downstream
Tssr66232 transcription start site region 66232 689 bp downstream
Tssr66233 transcription start site region 66233 667 bp downstream
Tssr66234 transcription start site region 66234 637 bp downstream
Tssr66235 transcription start site region 66235 617 bp downstream
Tssr66236 transcription start site region 66236 590 bp downstream
Tssr66237 transcription start site region 66237 569 bp downstream
Tssr66238 transcription start site region 66238 550 bp downstream
Tssr66239 transcription start site region 66239 499 bp downstream
Tssr66240 transcription start site region 66240 418 bp downstream
Tssr66241 transcription start site region 66241 406 bp downstream
Tssr66242 transcription start site region 66242 326 bp downstream
Tssr66243 transcription start site region 66243 312 bp downstream
Tssr66244 transcription start site region 66244 261 bp downstream
Tssr66245 transcription start site region 66245 199 bp downstream
Tssr66246 transcription start site region 66246 171 bp downstream
Tssr66247 transcription start site region 66247 124 bp downstream
Tssr66248 transcription start site region 66248 83 bp downstream
Tssr66249 transcription start site region 66249 60 bp downstream
Tssr66250 transcription start site region 66250 41 bp downstream
Tssr66251 transcription start site region 66251 16 bp downstream
Tssr66252 transcription start site region 66252 within coordinates
Tssr66253 transcription start site region 66253 17 bp upstream
Tssr66254 transcription start site region 66254 47 bp upstream
Tssr66255 transcription start site region 66255 107 bp upstream
Tssr66256 transcription start site region 66256 135 bp upstream
Tssr66257 transcription start site region 66257 171 bp upstream
Tssr66258 transcription start site region 66258 201 bp upstream
Tssr66259 transcription start site region 66259 230 bp upstream
Tssr66260 transcription start site region 66260 346 bp upstream
Tssr66261 transcription start site region 66261 372 bp upstream
Tssr66262 transcription start site region 66262 389 bp upstream
Tssr66263 transcription start site region 66263 395 bp upstream
Tssr66264 transcription start site region 66264 405 bp upstream
Tssr66265 transcription start site region 66265 434 bp upstream
Tssr66266 transcription start site region 66266 477 bp upstream
Tssr66267 transcription start site region 66267 505 bp upstream
Tssr66268 transcription start site region 66268 534 bp upstream
Tssr66269 transcription start site region 66269 554 bp upstream
Tssr66270 transcription start site region 66270 605 bp upstream
Tssr66271 transcription start site region 66271 623 bp upstream
Tssr66272 transcription start site region 66272 689 bp upstream
Tssr66273 transcription start site region 66273 701 bp upstream
Tssr66274 transcription start site region 66274 716 bp upstream
Tssr66275 transcription start site region 66275 724 bp upstream
Tssr66276 transcription start site region 66276 753 bp upstream
Tssr66277 transcription start site region 66277 761 bp upstream
Tssr66278 transcription start site region 66278 793 bp upstream
Tssr66279 transcription start site region 66279 840 bp upstream
Tssr66280 transcription start site region 66280 879 bp upstream
Tssr66281 transcription start site region 66281 910 bp upstream
Tssr66282 transcription start site region 66282 936 bp upstream
Tssr66283 transcription start site region 66283 950 bp upstream
Tssr66284 transcription start site region 66284 967 bp upstream
Tssr66285 transcription start site region 66285 982 bp upstream
Tssr66286 transcription start site region 66286 1019 bp upstream
Tssr66287 transcription start site region 66287 1037 bp upstream
Tssr66288 transcription start site region 66288 1073 bp upstream
Tssr66289 transcription start site region 66289 1121 bp upstream
Tssr66290 transcription start site region 66290 1182 bp upstream
Tssr66291 transcription start site region 66291 1211 bp upstream
Tssr66292 transcription start site region 66292 1249 bp upstream
Tssr66293 transcription start site region 66293 1267 bp upstream
Tssr66294 transcription start site region 66294 1288 bp upstream
Tssr66295 transcription start site region 66295 1573 bp upstream
Tssr66296 transcription start site region 66296 1706 bp upstream
Tssr66297 transcription start site region 66297 1749 bp upstream
Tssr66298 transcription start site region 66298 1774 bp upstream
Tssr66299 transcription start site region 66299 1843 bp upstream
Tssr66300 transcription start site region 66300 1850 bp upstream
Tssr66301 transcription start site region 66301 1874 bp upstream
Tssr66302 transcription start site region 66302 1888 bp upstream
Tssr66303 transcription start site region 66303 1929 bp upstream
Tssr66304 transcription start site region 66304 1937 bp upstream
Tssr66305 transcription start site region 66305 1947 bp upstream
Tssr66306 transcription start site region 66306 1981 bp upstream
Tssr72198 transcription start site region 72198 1875 bp upstream
Tssr72199 transcription start site region 72199 176 bp upstream
Tssr72200 transcription start site region 72200 770 bp downstream
Tssr72201 transcription start site region 72201 1271 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory