rs236771670 SNP Detail

Summary

• ID
  rs236771670
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40287029 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCCCCCAG TGATGACAAG
  GAAAATGCTC CCCGGGAGAC AGTCAAGGCC CCCAGCCCAG AACAAGGGCA AGACTAAGGA
  AAGCATCTTT GTATAAAGTT CCATCTCTGT GTACAATCAC CCGACCCCGC AAAGCTGGAG
  GCTCTTTTCA GCTTCTATGA GATTCAACTT CTACAAACCC CTGACCGCAG AGAACATGCC
  R
  GGAGAAAACA ACACAGCCCT GTGGGTGCTA GCTGAGCCAG GTACTCCAAC TTCAGGGTTT
  GACAGCTTGC TACACACCCA GTGAGACAGG CCTGTCTCAA GGAGACCTCT GAAGAGGGCT
  GGCAGAACAC ACAGGTGAAG AAAGATGGGA GAGGTCGCAC TTATCCATCC TCCACTTACC
  AGGAGAGCTT GAATCCTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322915613	CHEV_9_40183318	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236771670					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40287029 () rs orientation: forward

Symbol	Name	Function Class
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676805	regulatory region 676805	218 bp proximal
Rr676806	regulatory region 676806	524 bp proximal
Rr676807	regulatory region 676807	575 bp proximal
Rr676808	regulatory region 676808	678 bp proximal
Tssr88904	transcription start site region 88904	388 bp downstream
Tssr88905	transcription start site region 88905	480 bp downstream
Tssr88906	transcription start site region 88906	599 bp downstream
Tssr88907	transcription start site region 88907	626 bp downstream
Tssr88908	transcription start site region 88908	693 bp downstream
Tssr88909	transcription start site region 88909	1097 bp downstream