rs236778788 SNP Detail

Summary

• ID
  rs236778788
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88887947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGTGATGA AACTTAGGGG
  AACCAGCGCT TAGGATGTTA TGCTGGGCAG CCCCAAGCTC ATCCCAGCTC CTTTGTAACA
  GTATCCTGAC CTTCACAATA AAAATGGATG TAGGATGCCC CTCTTAGGGC TTCGTAAAGG
  TGTCTTGGTA ATATTCTCCA TTTGTTTGGC ACACAGTAGG TGCCTCATAA ACAATGGCTA
  Y
  TAGATACTAT GAGATATTTA CCTTGTCCTT TTGGCTGCTT AACATTGTCA TCCAAGGTAA
  ACTCCCATAA TCCCTCAAGG AGCTTCTTTC CCACAGTGGA ATTTCCCATC AGACACTCGG
  ATTCTCCTGT CCACCCTTCT GTTCTGCACT CAGCCCAGAT TGCAGGACTG CCTTACAGAA
  CTAAAAACAA TGTAAGCCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323783663	CHEV_11_88858435	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236778788					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88887947 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3524	CpG island 3524	1976 bp proximal
Gm11496	predicted gene 11496	within coordinates
Rr386439	regulatory region 386439	within coordinates
Rr454272	regulatory region 454272	538 bp distal
Rr454273	regulatory region 454273	195 bp distal
Rr454274	regulatory region 454274	360 bp proximal
Rr454275	regulatory region 454275	1419 bp proximal
Tssr110060	transcription start site region 110060	1361 bp upstream
Tssr110061	transcription start site region 110061	588 bp upstream