rs236793990 SNP Detail

Summary

• ID
  rs236793990
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:79325569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTAG ACCCCCTTTC CAAAGGGAGG
  T
  TATGCTAAGA AATATGTGGG GAAAC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325027493	CHEV_15_79271799	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236793990					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:79325569 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7334	CpG island 7334	within coordinates
Csnk1e	casein kinase 1, epsilon	within coordinates
Rr505648	regulatory region 505648	within coordinates
Rr505649	regulatory region 505649	439 bp proximal
Tssr135345	transcription start site region 135345	433 bp downstream
Tssr135346	transcription start site region 135346	641 bp downstream
Tssr135347	transcription start site region 135347	704 bp downstream
Tssr135348	transcription start site region 135348	742 bp downstream