rs236798266 SNP Detail

Summary

• ID
  rs236798266
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164676599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTAGAGAC AGCTCAAGGA
  AAAGGCAGGA AGGGGAAGGG GAGAAGGAAC CTGTGGCCTA AGTTTGCTTT CCTTAACAAT
  TCTGTTTTAT GTGGTGGCCC TTGCCCTAAC TTTCCGTACC TCTCATGGAG TGTGAGAATA
  CGGAAACGCA CTGTGGCTCT TTCTCTCCAC CCAGCTGCTA ACCGGCACCC TCACAGGCCT
  S
  TCTGTCTTTC CTCCCCAGAT CCAGCCAGAT GGTGTCACCC TGGAGTACAA CCCCTATGCT
  TGGAACCTGG TACTCCTGGA GCTGTGGGTC TCTTAGGGAT GTCTGGGTAC TTGAAGGGTT
  GGGGACCCCC TCTTCTGCTC ATTCCCTCCT CCCCCTAGAT TGCCAACGTG CTGTATATCG
  AGTCCCCAGC TGGGGTGGGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356441816	MGP_WTSI_2_164660179	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236798266					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356441816	MGP_WTSI_2_164660179	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164676599 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12674	CpG island 12674	262 bp distal
Ctsa	cathepsin A	within coordinates
Neurl2	neuralized E3 ubiquitin protein ligase 2	1223 bp upstream
Rr367364	regulatory region 367364	808 bp downstream
Rr569729	regulatory region 569729	1768 bp distal
Rr569730	regulatory region 569730	733 bp distal
Tssr21656	transcription start site region 21656	1801 bp downstream
Tssr21657	transcription start site region 21657	1744 bp downstream
Tssr21658	transcription start site region 21658	1709 bp downstream
Tssr21659	transcription start site region 21659	904 bp downstream
Tssr21660	transcription start site region 21660	867 bp downstream
Tssr21661	transcription start site region 21661	827 bp downstream
Tssr21662	transcription start site region 21662	631 bp downstream
Tssr21663	transcription start site region 21663	582 bp downstream
Tssr21664	transcription start site region 21664	541 bp downstream
Tssr21665	transcription start site region 21665	184 bp upstream
Tssr21666	transcription start site region 21666	495 bp upstream
Tssr21667	transcription start site region 21667	548 bp upstream
Tssr21668	transcription start site region 21668	950 bp upstream
Tssr21669	transcription start site region 21669	1002 bp upstream
Tssr21670	transcription start site region 21670	1732 bp upstream
Tssr27546	transcription start site region 27546	1199 bp upstream