rs236800290 SNP Detail

Summary

• ID
  rs236800290
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:61804675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGACCTGA GTACAGAAAG
  ACCTACTGAG GGACACTGTC ATGGTGGGAC TGTACAAAAA AACGGAAGAT GGTATCCTGC
  ATGGTAAGCA ACATACAGCA TTAATGTTAG TGCTATAAGT TTTATCTTTT GAAGGCTGTT
  GATTGCAAGG GTGCAAAAAG GATACAGGCT TGACTGAGTA AGATTGGACC CAACACTGAT
  A
  TCAGTTATCA GTTAGGGGTT GACAGTGGAA AATGGGTCTG GGAAATTCTA AAAAGGCCCT
  TGTCCACAGT CAAGAACTGC ATCAGAGAAG AGGAGTAGGG CTAAAATTAA TAAAAAAAAT
  ATACAGACAA AAGAGGGAGA TGCTAAATAT ACAAATGACA TGAGAGAGAG AGAGAGAGAG
  AGAGAGAGAG AGAGAGAGAA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	KK/HlJ	MOLF/EiJ	PL/J	PWK/PhJ	RIIIS/J	SM/J	SPRET/EiJ	ZALENDE/EiJ
ss361706235	MGP_WTSI_4_61547472	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	KK/HlJ	MOLF/EiJ	PL/J	PWK/PhJ	RIIIS/J	SM/J	SPRET/EiJ	ZALENDE/EiJ
rs236800290					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361706235	MGP_WTSI_4_61547472	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:61804675 () rs orientation: forward

Symbol	Name	Function Class
Rr376581	regulatory region 376581	439 bp upstream