rs236802778 SNP Detail

Summary

• ID
  rs236802778
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:47120270 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGAGGCTC CGGTGCCCTG
  GCCGTTGTAG AACACGCGGG TGGCAGCCGA GAGGAATTCA CCCGGACCCC TCCCCTTCCC
  CAAACTTCTG TGTTTCTCTA CGCAGATCTT CCAATCTGCG CTCTTCCGCT CCTCCCACTT
  GGCTCCCTCC TCCTCTATGG CCCGGGCTTA GGAATCCGTC CCTCCCCCCA ACCCGCCGCC
  S
  GCCGGGCCCG GGGATCCTCC CCCCCTCCCC CGACTCCCCC GCGTGCCGCC GCCGCCGCCC
  GGGTTCCTCT CCCCCCGCTC GGGCGCTCCC TGCCAAGCCC ATGATGTAAT GGTGTATGTT
  AATCAGTAGC ATGTGGGGAG CTCCGGGCGG CTCAGTCCTT CGCGAGCCGA CACTGGAGGC
  AGCAGTGGCG GCAGCGATAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss390996427	MGP_WTSI_14_47502488	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs236802778					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390996427	MGP_WTSI_14_47502488	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:47120270 () rs orientation: forward

Symbol	Name	Function Class
2810457G06Rik	RIKEN cDNA 2810457G06 gene	885 bp downstream
Cpgi6376	CpG island 6376	within coordinates
Gm34934	predicted gene, 34934	95 bp upstream
Rr288762	regulatory region 288762	1470 bp distal
Rr297079	regulatory region 297079	within coordinates
Samd4	sterile alpha motif domain containing 4	144 bp upstream
Tssr4382	transcription start site region 4382	1217 bp upstream
Tssr125240	transcription start site region 125240	118 bp upstream
Tssr125241	transcription start site region 125241	145 bp upstream
Tssr125242	transcription start site region 125242	181 bp upstream
Tssr125243	transcription start site region 125243	1763 bp upstream