rs236804917 SNP Detail

Summary

• ID
  rs236804917
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41497516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCATTGC TTCTCCCTTG
  GTACTTCTTG GAACCACAAT TGAGAGAAGG TACTCAGTTT CTCTGTGGAT GTCAAAGGTA
  GACTCCAAGT CTCTTGATGC CTTTGATCTT GAGAAACAGA GGAAGAGAGA GAGGTGGGGG
  AGAAGGAGAA GGGGGTAAAG AAGCAGATAC AAAGGGGAGA GTATCTTGGG GGAGAGTGTC
  W
  CAGGGAAGAG TGTCATGGGG AGCGAGTCCT GGTGGCCTCT GATTCTGGAC CTGCAAGAGC
  CTAGAGGCGT TTCCGCCTTT GGGTTCTCCA AAATAAGTTA GGGGCTTTAT CAGAATTTCT
  CTTTTTCCTT AAATGTAATT GAGGTGATTG TTGTTGCTGC TGTTTTTAAC CATTAAAATC
  TTCTAACCAA GCCAGACCTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	FVB/NJ	I/LnJ	LEWES/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss357684842	MGP_WTSI_3_41347003	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	FVB/NJ	I/LnJ	LEWES/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs236804917					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357684842	MGP_WTSI_3_41347003	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41497516 () rs orientation: forward

Symbol	Name	Function Class
Rr67360	regulatory region 67360	1116 bp distal
Rr80709	regulatory region 80709	1685 bp proximal