rs236806238 SNP Detail

Summary

• ID
  rs236806238
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:70082457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTCTGTGTT TGGGTAAGTG GAGAGACAGG
  GATCCTACTC GTCTCTAATG AAGGTTCTAT AGAAAGGGCC AGGGGCGTGG TAAGATGGCA
  AAGAGTGACA TTAGGAACTC TGGACTGGAT TTTTAAATtt tttttctttc ttttctctct
  Y
  tctttctttc tttctttctt tctttctttc tttctttctt tctttctttc tttcctcctc
  ctcctcctcc tcctcctcct cctcctcctc ctcctcctcc tcAGGGTCGT GGTAAGATGG
  CAAAGAGTGA AATTAGGAAC TCTGGACTGG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323355958	CHEV_10_69709375	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236806238					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:70082457 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1697	CpG island 1697	699 bp distal
Gm66806	predicted gene, 66806	1461 bp upstream
Rr433589	regulatory region 433589	1517 bp distal
Rr433590	regulatory region 433590	971 bp distal
Rr433591	regulatory region 433591	1169 bp distal
Slc16a9	solute carrier family 16 (monocarboxylic acid transporters), member 9	within coordinates
Tssr94008	transcription start site region 94008	1487 bp downstream
Tssr94009	transcription start site region 94009	1373 bp downstream
Tssr94010	transcription start site region 94010	1309 bp downstream
Tssr94011	transcription start site region 94011	194 bp downstream