rs236806974 SNP Detail

Summary

• ID
  rs236806974
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156907813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    accatgtca cagttaaata tagtgagcca
  cgttcacact gcttgataaa cggctgctgc cctgagctcc agccccccaa ccaatgacag
  ttattatttc ctgggccttt cccagagccg ccatgtttct ccaatcctgc aattaatgat
  M
  gcacttggca cagccagccc tttcaagTTC TGGTGGGACA GAGTCCATGG GTAAATATTT
  AAAGCACCTC CTACCTTCAG AGCTCTCAGC AACCCATCCC TGAAGGACAG TCCAGCCCTA
  CCACTCCTCA CTGCGACTCT GTGTGTCCAT                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320073536	CHEV_1_159010374	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236806974					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156907813 () rs orientation: forward

Symbol	Name	Function Class
Gm28694	predicted gene 28694	within coordinates
Gm30568	predicted gene, 30568	within coordinates
Rr421335	regulatory region 421335	108 bp distal
Rr421336	regulatory region 421336	690 bp distal
Rr421337	regulatory region 421337	1149 bp proximal
Rr421338	regulatory region 421338	1238 bp proximal
Rr421339	regulatory region 421339	1360 bp proximal
Rr421340	regulatory region 421340	1399 bp proximal
Rr421341	regulatory region 421341	1854 bp proximal
Rr421342	regulatory region 421342	1940 bp proximal