rs236808022 SNP Detail

Summary

• ID
  rs236808022
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54871668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACCC TGGCCCACAG ACACATTTTT
  R
  CATGCGCACA CACACACACA CACAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	MOLF/EiJ	NZW/LacJ	SPRET/EiJ
ss922323126	MGP_WTSI_14_54634211	EVA_MGPV3	EVA_MGPV3	f	SNP	A	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	MOLF/EiJ	NZW/LacJ	SPRET/EiJ
rs236808022					SNP	A	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss922323126	MGP_WTSI_14_54634211	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54871668 () rs orientation: forward

Symbol	Name	Function Class
Cdh24	cadherin-like 24	within coordinates
Cpgi6468	CpG island 6468	1599 bp distal
Rr289238	regulatory region 289238	within coordinates
Rr295556	regulatory region 295556	53 bp proximal
Rr299444	regulatory region 299444	668 bp distal
Rr299445	regulatory region 299445	533 bp proximal
Tssr128611	transcription start site region 128611	1922 bp upstream
Tssr128612	transcription start site region 128612	1897 bp upstream