rs236816315 SNP Detail

Summary

• ID
  rs236816315
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118577468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTTCCCAG CACCGTGCTG
  CGCCAGGGCC CTGAGCCATA AGGGGAACTG GGGGGGAGGG TGGAGAGAGC CTAGCACCCA
  GCCCTTCAGC GCTGCTAGCT CTGGTGTTTC CTAAACGCAG GGGGTGACTC GGGCGCCCCC
  TCCCCAAGAC TCAGGGGAAG GTAGGGAGTT GTGTAGGGGC TCTTTTTTTT TTTTTTTTTT
  W
  AATAAGCCGA GGCTCTCCCA AAGAAGAGAG CACCAAAAGT AGCGGAGCTC AGGTACGTCA
  ACCTAGTTGC AGTGGCCAGA CATGCGTTTA ATTTATAGAT CCCTGTATAT AGTTGTTGAC
  ATATGCACTA GACGCTATAA TCACATAGAA CTCTATGTAT CTCCCCACAG CCTGGGTAGC
  TACTGAATGG TGGGGTCCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355416540	MGP_WTSI_2_118572723	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236816315					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355416540	MGP_WTSI_2_118572723	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118577468 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12091	CpG island 12091	31 bp distal
Gm75538	predicted gene, 75538	1954 bp upstream
Inafm2	InaF motif containing 2	within coordinates
Rr397215	regulatory region 397215	1279 bp downstream
Rr563316	regulatory region 563316	1219 bp distal
Rr563317	regulatory region 563317	1467 bp distal
Rr563318	regulatory region 563318	632 bp distal
Tssr19569	transcription start site region 19569	1214 bp downstream
Tssr19570	transcription start site region 19570	1188 bp downstream
Tssr19571	transcription start site region 19571	within coordinates
Tssr19572	transcription start site region 19572	276 bp upstream