rs236816813 SNP Detail

Summary

• ID
  rs236816813
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:85589595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAGGGAGGT GCTGGGCTCA GATGGAGATG
  ACCAATGTGG TCTCTAGCTA TTCCACCACA TCCGGGCACA GCCTAAGAAC CGACGAGATT
  AACCATGGCC AGTCAAGCCT ACAGAGAGGC TAAGCAGTGT GGGACACCCC TCAGCCTTCT
  Y
  ACCTGGGCCA CCCATCATAG ATAGGATCAC CAAAGGGGCC CTTCACCACT CTCTTCCCAC
  GCCTCTTCTG CCTTGCTGCC TCTGCAGGGA CCATCCTTGA GGGTATTTGA CCTGCCTGTT
  AGTGAAAGGG TCCAGGCTTG AGGCAGGGGA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325042839	CHEV_15_85535824	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236816813					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:85589595 () rs orientation: forward

Symbol	Name	Function Class
Lncppara	long noncoding RNA near Ppara	within coordinates
Mirc31	microRNA cluster 31, including Mirlet7c-2 through Mirlet7b	1209 bp proximal
Mirlet7b	microRNA let7b	1925 bp upstream
Mirlet7c-2	microRNA let7c-2	1209 bp upstream
Rr507291	regulatory region 507291	1535 bp distal
Rr507292	regulatory region 507292	164 bp proximal
Rr507293	regulatory region 507293	1747 bp proximal
Tssr135762	transcription start site region 135762	1410 bp upstream