rs236836090 SNP Detail

Summary

• ID
  rs236836090
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:130552008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTCATTT TAAAGAATCC
  CTGACAGCAG AGTTGGGCAG ACTGAAGAAC CACATCTGGG TAATGGACAG GATCTAGGCA
  GTTGGCACAG CTTGTCTTTC TGGGGTGGGG GTGGAGGGGG TGTCCCCCTG TCAGGCTCTG
  TTCTGTCTTC CAGACCTCCA TGACTCCCTT GATGGGACTT TAGAGTTTTG TAAGCCAGTC
  R
  GCCTGGTCTT TAAGTGGGGG GGAAGGAATG AGAGGCGTCC TAAACCCATG AGATGTGGAG
  GAGGGAGCTT GGCCAAGATC TTCCCTGCAG CAGGGGCTGG GTAGGGCGTA GAGGAGAGCC
  AGTGTCCCAG ACCCTCCCAC TCCTCCCTGG TAAGCTGCAG TCTTGGGGAC TAGAGCTTTG
  GAAAGAGAGG CTCAGCAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321318871	CHEV_4_130380612	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236836090					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130552008 () rs orientation: forward

Symbol	Name	Function Class
Gm26716	predicted gene, 26716	within coordinates
Sdc3	syndecan 3	mRNA-UTR
Tssr39281	transcription start site region 39281	1971 bp downstream
Tssr39282	transcription start site region 39282	1650 bp downstream
Tssr39283	transcription start site region 39283	1570 bp downstream
Tssr39284	transcription start site region 39284	1362 bp downstream
Tssr39285	transcription start site region 39285	1298 bp downstream
Tssr39286	transcription start site region 39286	1231 bp downstream
Tssr39287	transcription start site region 39287	1217 bp downstream
Tssr39288	transcription start site region 39288	1173 bp downstream
Tssr39289	transcription start site region 39289	1052 bp downstream
Tssr39290	transcription start site region 39290	1045 bp downstream
Tssr39291	transcription start site region 39291	899 bp downstream
Tssr39292	transcription start site region 39292	816 bp downstream
Tssr39293	transcription start site region 39293	1169 bp upstream
Tssr39294	transcription start site region 39294	1324 bp upstream
Tssr39295	transcription start site region 39295	1490 bp upstream
Tssr39296	transcription start site region 39296	1516 bp upstream