rs236843770 SNP Detail

Summary

• ID
  rs236843770
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130662464 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCAT GGAGCCCCTC CCACCACTCA
  Y
  TGCAGTGCTC ACCATGGAGC CCCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321319092	CHEV_4_130491068	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236843770					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130662464 () rs orientation: forward

Symbol	Name	Function Class
Laptm5	lysosomal-associated protein transmembrane 5	within coordinates
Tssr39332	transcription start site region 39332	685 bp downstream
Tssr39333	transcription start site region 39333	670 bp downstream
Tssr39334	transcription start site region 39334	621 bp downstream
Tssr39335	transcription start site region 39335	603 bp downstream
Tssr39336	transcription start site region 39336	587 bp downstream
Tssr39337	transcription start site region 39337	560 bp downstream
Tssr39338	transcription start site region 39338	527 bp downstream
Tssr39339	transcription start site region 39339	480 bp downstream
Tssr39340	transcription start site region 39340	432 bp downstream
Tssr39341	transcription start site region 39341	414 bp downstream
Tssr39342	transcription start site region 39342	328 bp downstream
Tssr39343	transcription start site region 39343	307 bp downstream
Tssr39344	transcription start site region 39344	246 bp downstream
Tssr39345	transcription start site region 39345	209 bp downstream
Tssr39346	transcription start site region 39346	194 bp downstream
Tssr39347	transcription start site region 39347	339 bp upstream
Tssr39348	transcription start site region 39348	850 bp upstream
Tssr39349	transcription start site region 39349	895 bp upstream
Tssr43605	transcription start site region 43605	580 bp upstream
Tssr43606	transcription start site region 43606	321 bp upstream
Tssr43607	transcription start site region 43607	39 bp upstream
Tssr43608	transcription start site region 43608	983 bp downstream