rs236850349 SNP Detail

Summary

• ID
  rs236850349
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:84129487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAACA GGCTAGCATG GTGCTGGAGA
  Y
  AGAGCTGAGA GTTCTACATC TTGAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319823984	CHEV_1_84148341	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236850349					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:84129487 () rs orientation: forward

Symbol	Name	Function Class
Pid1	phosphotyrosine interaction domain containing 1	within coordinates
Tssr12590	transcription start site region 12590	1561 bp upstream
Tssr12591	transcription start site region 12591	1278 bp upstream
Tssr12592	transcription start site region 12592	921 bp upstream
Tssr12593	transcription start site region 12593	885 bp upstream
Tssr12594	transcription start site region 12594	830 bp upstream
Tssr12595	transcription start site region 12595	434 bp upstream
Tssr12596	transcription start site region 12596	1196 bp downstream