rs236862813 SNP Detail

Summary

• ID
  rs236862813
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:95722646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACTCAGGAT CCCCCAATCC GCATGCCAGT
  ACCAGATTCC TCGCGGCAGA CCTATGATGC TCTCAGAAGA CAGCTCTAGG TCTTGATCTT
  GCTTCAGCCA ACGCAACCCT ACACTACCGC TGCGCTGGCT GCGCCTTGCT TCCTTCCCCC
  W
  CTCCACCCCC ACCCCACCCC CGCCCACCAG ACACCCCCCA CCCACCCAAA GGAAGAAAAA
  GTCAGAAGGA ACTACCGCCT CCTGCTGGTA GAACGAGGTA GAAGAACCGA CCACTGACCT
  CGGAGAGTGT GAAAAATCCT AGCACTCCAG                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323819192	CHEV_11_95693134	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236862813					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:95722646 () rs orientation: forward

Symbol	Name	Function Class
Abi3	ABI family member 3	within coordinates
Cpgi3603	CpG island 3603	255 bp distal
Cpgi3604	CpG island 3604	1851 bp proximal
Phospho1	phosphatase, orphan 1	within coordinates
Rr369341	regulatory region 369341	1368 bp upstream
Rr455202	regulatory region 455202	1118 bp distal
Rr455203	regulatory region 455203	72 bp proximal
Tssr3654	transcription start site region 3654	1276 bp downstream
Tssr104394	transcription start site region 104394	1052 bp downstream
Tssr104395	transcription start site region 104395	483 bp downstream
Tssr104396	transcription start site region 104396	447 bp downstream
Tssr104397	transcription start site region 104397	282 bp downstream
Tssr110283	transcription start site region 110283	within coordinates