rs236864393 SNP Detail

Summary

• ID
  rs236864393
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137178099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              NNNNNNNNNN NNNNNNNNNN
  NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN
  NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN
  NNNNNNNNNN NNTAACTTCA GCAGTGGTGG TGACATCAGC AGTGGTGGTG ACTTCAGCAG
  A
  GGTGGTGACA TCAGCCGTTG TGGTGACATC AATAGTGGTT GTGACATCAG CAGTGGTTGT
  GACATCAGCA GTGGTGGTGA CATCAGCAGT GGTGGTGACA TCACCAGTGG TTGTGATTTC
  AGCAGTGGTT GTGACTTCAG CAGTGGTGGT GACATCAGCA GTGGTGGTGA CATCACCAGT
  GGTTGTGATT TCAGCAGTGG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NON/ShiLtJ	PL/J	PWK/PhJ	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ
ss366873405	MGP_WTSI_5_137625347	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NON/ShiLtJ	PL/J	PWK/PhJ	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ
rs236864393					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366873405	MGP_WTSI_5_137625347	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137178099 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1677	transcription start site region 1677	8 bp downstream
Tssr1678	transcription start site region 1678	1233 bp downstream
Tssr49309	transcription start site region 49309	527 bp upstream
Tssr49310	transcription start site region 49310	887 bp upstream
Tssr49311	transcription start site region 49311	901 bp upstream
Tssr49312	transcription start site region 49312	1281 bp upstream
Tssr49313	transcription start site region 49313	1529 bp upstream
Tssr49314	transcription start site region 49314	1800 bp upstream
Tssr49315	transcription start site region 49315	1816 bp upstream
Tssr53919	transcription start site region 53919	387 bp downstream
Tssr53920	transcription start site region 53920	403 bp downstream
Tssr53921	transcription start site region 53921	558 bp downstream
Tssr53922	transcription start site region 53922	599 bp downstream
Tssr53923	transcription start site region 53923	640 bp downstream
Tssr53924	transcription start site region 53924	654 bp downstream
Tssr53925	transcription start site region 53925	692 bp downstream
Tssr53926	transcription start site region 53926	723 bp downstream
Tssr53927	transcription start site region 53927	872 bp downstream
Tssr53928	transcription start site region 53928	890 bp downstream
Tssr53929	transcription start site region 53929	927 bp downstream
Tssr53930	transcription start site region 53930	992 bp downstream
Tssr53931	transcription start site region 53931	1017 bp downstream
Tssr53932	transcription start site region 53932	1033 bp downstream
Tssr53933	transcription start site region 53933	1071 bp downstream
Tssr53934	transcription start site region 53934	1103 bp downstream
Tssr53935	transcription start site region 53935	1154 bp downstream
Tssr53936	transcription start site region 53936	1175 bp downstream
Tssr53937	transcription start site region 53937	1265 bp downstream
Tssr53938	transcription start site region 53938	1301 bp downstream
Tssr53939	transcription start site region 53939	1355 bp downstream
Tssr53940	transcription start site region 53940	1531 bp downstream
Tssr53941	transcription start site region 53941	1571 bp downstream
Tssr53942	transcription start site region 53942	1630 bp downstream
Tssr53943	transcription start site region 53943	1795 bp downstream
Tssr53944	transcription start site region 53944	1844 bp downstream
Tssr53945	transcription start site region 53945	1854 bp downstream
Tssr53946	transcription start site region 53946	1875 bp downstream
Tssr53947	transcription start site region 53947	1983 bp downstream