rs236864502 SNP Detail

Summary

• ID
  rs236864502
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48689839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACACATTG TCTGGAAAAA
  CAAAACACAT AAGAAGAGGA GGAGGAGAAG TTAAATTCCA TGCAATTTAC GAATAGAAAA
  AAACAAGCCA GCATGGTCTA CAGAGAGCCA GGGATACAAA GAGAAACACT GTCTCCAAAA
  CAAAACAAAA CCAAAAAAAA GAAAAAAAAA GAAAGAAAAA CAAATACTTA TACCTAGGGC
  Y
  TGGTGTTTTA GGGCTATAAT CTTAGTTACT TGGCAGGCTG AGGAAGGGAG ATCATAAATT
  TAAGGCCAAT TTGAGCTATG CACATCCTGA ATCAAAACGA AACAAGGTTG AATGTGGTGA
  TGAATTCCAT CATCGAGGCC AGCCTGGTCT ACAGAGTGAG TTTCAGGACA GCCAGGACTA
  CACAGAGAAA CCCTGTCTCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323664625	CHEV_11_48612514	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236864502					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48689839 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2778	CpG island 2778	943 bp proximal
Gm25296	predicted gene, 25296	1854 bp upstream
Gm36109	predicted gene, 36109	within coordinates
Rack1	receptor for activated C kinase 1	1348 bp upstream
Rr246622	regulatory region 246622	within coordinates
Tssr101138	transcription start site region 101138	1029 bp upstream
Tssr101139	transcription start site region 101139	1345 bp upstream
Tssr101140	transcription start site region 101140	1379 bp upstream
Tssr101141	transcription start site region 101141	1852 bp upstream
Tssr107634	transcription start site region 107634	389 bp downstream
Tssr107635	transcription start site region 107635	946 bp downstream