rs236870473 SNP Detail

Summary

• ID
  rs236870473
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:33858229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACCTACTG AGAAATCTCT
  CTAGTCCCCC CAACTAAATT TTAACAATTT ATAGTCAAAA TGGGTATGGT GGTATACACC
  TGTAATGCCA GCACTCAGAT GGCTGAAGCA GTAGAACTGT TGAATCCCAG CCTGGGCTAC
  ATAGTGAGAA ACTGACTTAA AATAAACAAA AAACAAAAAA AGGAAAGGAA AGGAAAAAGG
  R
  AAAAGGGAAA AGGGAAAGGG AAAGGAAAGA AAAAGAGAGG GGGGCGAGGA GAGGAAGAGA
  GAAGAGGAGA GGAGAGAAGA GAGAAGAGAA AAAGAAAAGC AAGCAAGCAA GCTAAACTAA
  TGGTGGCACA CACCTGTAAT CTCAGCACAT GGGAGGCAGA GGCAGAAGGT TATCCTCAAC
  TATAAAGCAA GTTTGAGGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi5/Ianm	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss398056288	MGP_WTSI_17_33776200	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi5/Ianm	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs236870473					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398056288	MGP_WTSI_17_33776200	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:33858229 () rs orientation: forward

Symbol	Name	Function Class
Gm20507	predicted gene 20507	within coordinates
Pram1	PML-RAR alpha-regulated adaptor molecule 1	within coordinates
Rr392542	regulatory region 392542	238 bp upstream
Tssr143785	transcription start site region 143785	1443 bp downstream
Tssr143786	transcription start site region 143786	1425 bp downstream
Tssr143787	transcription start site region 143787	1145 bp downstream
Tssr143788	transcription start site region 143788	1132 bp downstream
Tssr143789	transcription start site region 143789	1114 bp downstream
Tssr143790	transcription start site region 143790	1944 bp upstream
Tssr147440	transcription start site region 147440	656 bp downstream