rs236888098 SNP Detail

Summary

• ID
  rs236888098
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:62226144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAACAGTAG GAGGAAAATG
  GAACTATCTT GAGGGTGCTC AAGAATGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGAGAGAGA GAGAGAGAGA GAGAGAGAGA GACAGAGAGA CAGAGACAGA GACAGAGACA
  GAGACAGATA AAGAGAGATA AAGAGAGATA AAGAGAGAGA AGGGGAAGGA GGGAGGGGGA
  G
  GGGAGGGAGG GAGAGGAGGG GAAGGAGGGG GGAAAGGAGG AAAGGAGGGA GAGAGAGAGG
  AAGAAAGAGG GGGAAAGGGA GGGAGGGAGA GAGAGAGTAA GGGAGAGAGA GAGGAGGGAG
  GGAGAGAGAG AGAGAGTTAG TTCGGGTTGA GTCACATCTG AGAGGCTGAG AACCTGGGAG
  CCCCTCAGTC CACAAGGCTG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	CBA/J	CE/J	DBA/2J	KK/HlJ	LP/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400898829	MGP_WTSI_18_62252727	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	CBA/J	CE/J	DBA/2J	KK/HlJ	LP/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236888098					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400898829	MGP_WTSI_18_62252727	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:62226144 () rs orientation: forward

Symbol	Name	Function Class
Gm41750	predicted gene, 41750	134 bp upstream
Rr354924	regulatory region 354924	1858 bp proximal