rs236894549 SNP Detail

Summary

• ID
  rs236894549
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:108143895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATCCTCCT GCCTCAGGCC
  CCTGAGTAGC AAGGGCTAAT GTTAGCTATG CCACAAGGCC CAGCTAACAG CATTTCAGTG
  AGAATTTTAC TGGACATTTA TAAACAGAAA AGGAACAGAA ACCCTCATTG CTAGAACCCA
  CATCAGCACA ATGTTTGGAT CTTCAAGTCC AGCATAGCTC CACTGAGATG TTTGCACAGT
  R
  AAAAAGGAGG GAGAAATAGC AACTACTTCC CTCCAAGGGA ACTAGAGTTG CATATCCAGA
  TATTAGTAAT ATCTCAAAAG AGAAAGGAAC GCACGGTAAA AAGAAGGTAG GGGCAATAAA
  GACCAAGGTT GTTTAGAGTC CCAGTAAGAT GTTCTTTTTT TCTGTAGCTT TTCAGAACTT
  GGTTTTGCAA ACTGTTTTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387282919	MGP_WTSI_12_109415846	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236894549					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387282919	MGP_WTSI_12_109415846	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:108143895 () rs orientation: forward

Symbol	Name	Function Class
Ccnk	cyclin K	1943 bp upstream
Cpgi5076	CpG island 5076	600 bp proximal
Rr403488	regulatory region 403488	1693 bp upstream
Rr472438	regulatory region 472438	1059 bp distal
Rr472439	regulatory region 472439	569 bp proximal
Rr472440	regulatory region 472440	1570 bp proximal
Setd3	SET domain containing 3	within coordinates
Tssr114948	transcription start site region 114948	847 bp upstream
Tssr114949	transcription start site region 114949	1215 bp upstream
Tssr114950	transcription start site region 114950	1497 bp upstream
Tssr114951	transcription start site region 114951	1500 bp upstream
Tssr114952	transcription start site region 114952	1907 bp upstream
Tssr117676	transcription start site region 117676	1574 bp downstream
Tssr117677	transcription start site region 117677	1601 bp downstream