rs236894855 SNP Detail

Summary

• ID
  rs236894855
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136061118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGCCGGGT GGGAGTGAGA
  CATGTCAATA TGGCATCTAC AGCAGATGGG GAGAGGGGAG CTACCTGCCG TAAAAAGAAA
  ATGGAAGCCC AACCTCCAAC CAGTGTGAAC CTGGACTGAC AGGACAGGAG ACGGGGTGCT
  CTATCCATGG GGTCTTTCCT TTAGACTCCA TTTTACCGGA GAGAGCCAAA CAAAGGCCTT
  Y
  CCCCTTGATT CATACTCCCC AGTCTGGGCC TGGCATGGTA AAATATTGGA GTTCCCACTT
  CAGGAGCCTG GGGGCATGGG CACCTGTATA GAAAATAAAG GGAAAGCTAG TGTTCCTTCC
  CACAATGACT ATCGGGACGT TTCTGGGACC TTTACCACAG AGAAGGGCTG GTGGCTGCCT
  TCTGCACCCA GGGCTTTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351559712	MGP_WTSI_1_138029957	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236894855					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351559712	MGP_WTSI_1_138029957	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136061118 () rs orientation: forward

Symbol	Name	Function Class
Cpgi805	CpG island 805	1113 bp distal
Kif21b	kinesin family member 21B	within coordinates
Rr367010	regulatory region 367010	1733 bp upstream
Rr396320	regulatory region 396320	1969 bp downstream
Rr419369	regulatory region 419369	1981 bp distal
Rr419370	regulatory region 419370	1961 bp distal
Tssr9041	transcription start site region 9041	1999 bp downstream
Tssr9042	transcription start site region 9042	1976 bp downstream
Tssr9043	transcription start site region 9043	1939 bp downstream
Tssr9044	transcription start site region 9044	1886 bp downstream
Tssr9045	transcription start site region 9045	341 bp downstream
Tssr13915	transcription start site region 13915	312 bp upstream
Tssr13916	transcription start site region 13916	1728 bp downstream
Tssr13917	transcription start site region 13917	1776 bp downstream
Tssr13918	transcription start site region 13918	1800 bp downstream