rs236901204 SNP Detail

Summary

• ID
  rs236901204
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164299398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCTTCTT TCTTTCTCCT
  GTCATGTGGA AAGGAATTTG GCGCTTGCAG CCACGTAGCC TTTGTTTAAG CCCAGTCTAA
  GTCACCTTCC TCTCCCTCCC CCTCTCCCCC TCTCTCCCTC CCCATCTCTC CCTCTCCCCT
  TCTCTCCCTC TCCCCTTCTC TCCCTCTCTC CCTCTCTCCC TCTCTCCCTC TCTCCCTCTC
  T
  CCCTCTCTCC CTCTCTCCCT CTCCCCCTCT CCCTCTCCCC CTCTCTCCCT CTCTTCCTCT
  CACCCTCTCT CCCTCTCCCC CTCTCTCCCT CTCCCCTTCT CTCCCTCTCT TTCTTGTTTG
  TTTGTTTTGT TTTTTGTAAC AGGGTTTCTC TGTCCTGTAA CTTGCTCAGT ACACCAGGTT
  GGCCACAAAC TCAGATATCC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10SnJ	C57L/J	CZECHII/EiJ	I/LnJ	LG/J	MOLF/EiJ	NZB/BlNJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ
ss356432545	MGP_WTSI_2_164282978	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10SnJ	C57L/J	CZECHII/EiJ	I/LnJ	LG/J	MOLF/EiJ	NZB/BlNJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ
rs236901204					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356432545	MGP_WTSI_2_164282978	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164299398 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr397476	regulatory region 397476			352 bp downstream
Rr569622	regulatory region 569622			1993 bp distal
Rr569623	regulatory region 569623			492 bp distal
Rr569624	regulatory region 569624			within coordinates
Rr569625	regulatory region 569625			271 bp distal
Sys1	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)			Intron
				Noncoding-Transcript-Variant
Tssr21592	transcription start site region 21592			490 bp downstream