rs236911275 SNP Detail

Summary

• ID
  rs236911275
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:76300572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATATGTTAT AAAAATATAT AACCAATCAC
  CTGTCCTGCT CTAGTTAACT ACATGCAGCT GATCAGCTCC TTTGTCCCCT TATCACTCTG
  AGCTCCAGAC CTAAAGTTCA GGAGAATGAA TTAAGGACCT TGAAGTCAGG TCCCTTGGAT
  Y
  CACCCAGTCT CCAGCGGGTA CTCCCTTGCT TAAGCCAAAA TGTCAACCAA AATACAATTG
  GATAACACTG cagctcaccc cagctcaccc cagctcacTT CTCACTTTGT GTTCCCATCC
  TTTTAAAATG TTGTACAGTA TCCTTCCTGG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324104736	CHEV_12_77354785	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236911275					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:76300572 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4777	CpG island 4777	1089 bp proximal
Gm47525	predicted gene, 47525	377 bp downstream
Mthfd1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	1500 bp upstream
Rr403350	regulatory region 403350	1247 bp upstream
Rr468112	regulatory region 468112	1010 bp proximal
Rr468113	regulatory region 468113	1929 bp proximal
Tssr113934	transcription start site region 113934	1411 bp upstream
Tssr113935	transcription start site region 113935	1446 bp upstream
Tssr113936	transcription start site region 113936	1492 bp upstream
Tssr113937	transcription start site region 113937	1534 bp upstream
Tssr113938	transcription start site region 113938	1550 bp upstream
Tssr113939	transcription start site region 113939	1573 bp upstream
Tssr113940	transcription start site region 113940	1655 bp upstream
Tssr113941	transcription start site region 113941	1685 bp upstream
Tssr116711	transcription start site region 116711	1248 bp downstream
Tssr116712	transcription start site region 116712	1274 bp downstream