rs236939095 SNP Detail

Summary

• ID
  rs236939095
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10582147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGAACACA GACTGAAAGC
  TCTAGTGAGT TGTCTAAGAT TGTGTTGCTG AGAGTTAGGA CTTGAGCCCA TGTCTAGTCT
  TGCTACAAAG CCTAATGTTT CCCCTTAGTC AACCAGTTTC CCAGAGTCAA GTCGAGTGCC
  AGCTGGGGAG GTACAAATCA TCTTCAGTTC CACCTGGTTC AAACCTAGCT ACACTGATCT
  Y
  TGCCTCATTT GTAAAATAGG GAGTTAGCTC TCCTCCTCCG GCATTCTGGA GATGCTTCAG
  GACTAGGCTT CTGCTGCTCC TCCTTTGGGG TTGGGGACAT GGAGGCTGTC TGATGAAGCC
  TGGGACCTGC ATCTGCGGGG CTGATTGCAC TAGTCACCTG GGTGTTTAGG CTCTTCCTGT
  GAAATTCCTG CGTTGTATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401732813	MGP_WTSI_19_10679273	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236939095					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401732813	MGP_WTSI_19_10679273	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10582147 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10614	CpG island 10614	1733 bp distal
Cpgi10615	CpG island 10615	449 bp proximal
Ddb1	damage specific DNA binding protein 1	814 bp upstream
Gm59162	predicted gene, 59162	1718 bp downstream
Rr362968	regulatory region 362968	within coordinates
Rr405857	regulatory region 405857	572 bp upstream
Tkfc	triokinase, FMN cyclase	within coordinates
Tssr155068	transcription start site region 155068	756 bp upstream
Tssr155069	transcription start site region 155069	773 bp upstream
Tssr155070	transcription start site region 155070	844 bp upstream
Tssr155071	transcription start site region 155071	901 bp upstream
Tssr155072	transcription start site region 155072	1136 bp upstream
Tssr155073	transcription start site region 155073	1490 bp upstream
Tssr158200	transcription start site region 158200	468 bp upstream
Tssr158201	transcription start site region 158201	446 bp upstream
Tssr158202	transcription start site region 158202	416 bp upstream
Tssr158203	transcription start site region 158203	386 bp upstream
Tssr158204	transcription start site region 158204	582 bp downstream
Tssr158205	transcription start site region 158205	627 bp downstream
Tssr158206	transcription start site region 158206	684 bp downstream
Tssr158207	transcription start site region 158207	1085 bp downstream