rs236940336 SNP Detail

Summary

• ID
  rs236940336
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:74026934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTCTGGTGC TGGCTGGTTG ACATTTCCTC
  CTTTTCTGAT TCTCTAGAGA GCCAGGTTGA ACCAGATAAA CCAATCAAAT GCAGCCTGGG
  ACTCTATAAT AGCCAATAGC TCCACAGGAG GGTAAGACTC TAATTATGAC ACCAGAAGAC
  Y
  TCTCCCCACC CCCATCTCTT GGCCCCTAGG CCCTCCTCCA GTCCCCAGTC CCTGAGCCTG
  GGTGGGGCCA TCTCAGTCTC CCCTAGCAAG ATAATCTGAT GGGCACTGCC AGCTCCTATT
  CAGGGCCCTG TCCAGTcctc cccccccccc                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319793230	CHEV_1_74034349	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236940336					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:74026934 () rs orientation: forward

Symbol	Name	Function Class
Rr17341	regulatory region 17341	734 bp distal
Rr27623	regulatory region 27623	758 bp distal
Rr34548	regulatory region 34548	within coordinates
Tns1	tensin 1	within coordinates
Tssr12229	transcription start site region 12229	973 bp upstream