rs236946980 SNP Detail

Summary

• ID
  rs236946980
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:53746299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGCAAACG TTTGAGATCG
  CTAAGCTCAG CTTTCCCGGA GCCTTGCCGG CTCACAAAGC CATCGAAGAC ACTATAAAGG
  AAAACAAAAC AAAACAAAAA ACAAAACAAA AACAAAACAA ACAAACAAAC AAAAAAACCC
  CAAACCAACC ATTGCTAGAA TAGTTAAGGG AATCCAAACT TGTTGTAGAG CAAGTGAAGT
  R
  GAGGCCAGAC TAGGTGACTC AGATGCATGA CTCAAAGCCG ACACGGGGCT GGCTGACAGC
  TCCCGGAGGC GGGGGGCACC ACGTCTGTCA CATTTCAGGA AAGTACCAGG CTCGGGAGGG
  CGACAGGAAG CCTCCCCGGC GCGTGCGTGA GTGTGCCGGG GCGGCCTCAG CCCGCCGCTC
  CCCGCCACGC GCCCACCGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364963832	MGP_WTSI_5_53980196	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236946980					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364963832	MGP_WTSI_5_53980196	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:53746299 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15869	CpG island 15869	within coordinates
Rbpj	recombination signal binding protein for immunoglobulin kappa J region	within coordinates
Rr367840	regulatory region 367840	20 bp upstream
Rr611644	regulatory region 611644	234 bp distal
Rr611645	regulatory region 611645	392 bp proximal
Rr611646	regulatory region 611646	767 bp proximal
Rr611647	regulatory region 611647	1534 bp proximal
Tssr46224	transcription start site region 46224	190 bp downstream
Tssr46225	transcription start site region 46225	3 bp upstream
Tssr46226	transcription start site region 46226	472 bp upstream
Tssr46227	transcription start site region 46227	1382 bp upstream
Tssr46228	transcription start site region 46228	1396 bp upstream
Tssr46229	transcription start site region 46229	1465 bp upstream
Tssr46230	transcription start site region 46230	1496 bp upstream
Tssr46231	transcription start site region 46231	1699 bp upstream
Tssr46232	transcription start site region 46232	1716 bp upstream
Tssr46233	transcription start site region 46233	1764 bp upstream
Tssr51023	transcription start site region 51023	297 bp downstream
Tssr51024	transcription start site region 51024	1221 bp downstream
Tssr51025	transcription start site region 51025	1615 bp downstream