rs236947737 SNP Detail

Summary

• ID
  rs236947737
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:49427756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAACAGTG CATGTTTTGT
  TGAACAAGCC TGATATACAT ATGTGTGTGC ATTCTGATAT ATAGCCCCAT CTCACCATAA
  AGAACAAGTA AAATTATTTA AAGGGATTCA AACTTGCTTT TTCGGGAATT GCAAATAACC
  TTTGCATCAG GAAACTAGTT TTAATATTAT TTCAAACTAT ATGCTATGTT TTTACGATCA
  R
  TCATCCTGCT TTGAGAGACT CGCATTCACG TAACCTTAAA ATAACACAGC ACACCCTTAA
  TCTGCATGCA AAACAATTTT CAAGCCGCCA TAAGCCTTGA CATATAAAAT CAGAGTATTG
  CAGCTCTCAC TGTACAAAAC CCAGTTTTTG CTCCTTGAAA GTAAACAGAA GAAAAAAAAA
  AAACCTTACT TTGCCTGCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385922513	MGP_WTSI_12_50481960	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236947737					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385922513	MGP_WTSI_12_50481960	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:49427756 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4581	CpG island 4581	1988 bp proximal
Foxg1	forkhead box G1	1910 bp upstream
Gm34304	predicted gene, 34304	within coordinates
Gm56518	predicted gene, 56518	within coordinates
Rr465759	regulatory region 465759	943 bp proximal
Tssr113389	transcription start site region 113389	1001 bp upstream
Tssr113390	transcription start site region 113390	1084 bp upstream
Tssr113391	transcription start site region 113391	1679 bp upstream
Tssr113392	transcription start site region 113392	1703 bp upstream
Tssr113393	transcription start site region 113393	1818 bp upstream
Tssr116231	transcription start site region 116231	851 bp downstream