rs236948849 SNP Detail

Summary

• ID
  rs236948849
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:35021055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCTATGC CTCTGGGACC
  AGACTTGTAG GACTGGGAGC TCTGGAGAGC TGAAAGAGAT AAAAGAGAAG TGGGCAAAAG
  GGGGCCCAGA AGAAGTAGCA ATTAATCTAG AGAGAAGAGA CCAAAATGTT TAGAAGGCTA
  GTCCCCACAT TCCGTCAACA CACCTTCTTC CCCAAGGCCT TCAGCCCTTG CCCTCTCAAA
  Y
  TAACACAGCC AGTTCAGACT AGTGCAACAC ACTGGGCACT TCCAGACACT TCATTTTACC
  TCACCAAGTC TTAGGGGCCC GCCATGCATC AGAAGAGATT AGCCTCAACA ACTGGGAGCA
  TGTAAAGTGG ATGGGCTGAA GAAAAGCAAG GGGTGTGTGT GTGTGTGGCA GGGAGGGGGT
  TCAGGAGTGA GAAAATCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322899068	CHEV_9_34917344	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236948849					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:35021055 () rs orientation: forward

Symbol	Name	Function Class
Rr383192	regulatory region 383192	1585 bp upstream
St3gal4	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	within coordinates