rs236950701 SNP Detail

Summary

• ID
  rs236950701
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:96183322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCCTTCA GCTACCCTTC
  CCGTGGCGCG CGGCCTCGCT CGGAGAAGAC GGAAGAGGAC AGGGCGCGCC GGGCCAGGAG
  TCGCCGACGT CCTTGGCAAC GCGGTCCTTC CCCCCCCCCC ACACCCCACG CGGGCTTCCC
  CCCCGGGTCC GCTGCATCCT CGGCGGAGGT ATTCCACGGT GACGGGTCTC TCGCCTCGCG
  Y
  ACAAGATGGG GCCCGGGGAG CGGCCGCCCG GCGGATCCAT GGGCGCCGCC ATTTTGTGAG
  GCGCGGCGGC CGGAGCTCGG CTGTGTGTAA TGGTTGCAGA GAGTGACCCC CCTCTAGGGA
  ATCCCCGGCG CTGACGGTTA CGCAAGGGGC CGTGCGCAAG TGCGGAGCGC AGGGAATCCG
  CACAGCCCGG CCAGCCCGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395085935	MGP_WTSI_15_96115872	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236950701					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395085935	MGP_WTSI_15_96115872	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:96183322 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7599	CpG island 7599	within coordinates
Cpgi7600	CpG island 7600	848 bp proximal
Gm38469	predicted gene, 38469	within coordinates
Gm62599	predicted gene, 62599	within coordinates
Rr369997	regulatory region 369997	1068 bp downstream
Rr391146	regulatory region 391146	within coordinates
Rr508521	regulatory region 508521	1867 bp distal
Rr508522	regulatory region 508522	1343 bp distal
Rr508523	regulatory region 508523	456 bp distal
Rr508524	regulatory region 508524	136 bp proximal
Rr508525	regulatory region 508525	254 bp proximal
Rr508526	regulatory region 508526	1244 bp proximal
Rr508527	regulatory region 508527	1493 bp proximal
Rr508528	regulatory region 508528	1587 bp proximal
Tssr132814	transcription start site region 132814	564 bp upstream
Tssr132815	transcription start site region 132815	1315 bp upstream
Tssr132816	transcription start site region 132816	1348 bp upstream
Tssr132817	transcription start site region 132817	1419 bp upstream
Tssr132818	transcription start site region 132818	1489 bp upstream
Tssr132819	transcription start site region 132819	1807 bp upstream
Tssr132820	transcription start site region 132820	1829 bp upstream
Tssr136021	transcription start site region 136021	50 bp downstream
Tssr136022	transcription start site region 136022	268 bp downstream
Tssr136023	transcription start site region 136023	444 bp downstream