rs236955387 SNP Detail

Summary

• ID
  rs236955387
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:58992945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGGAATATT TTCCATCGTC
  ATACTGGGCT GTGTTTAGGC CTCGTATAAT ACATAATGAA TAGTAACAGA GCAGCAGTGT
  TTGGCCAGCG ATGGGACAGA TAGAACTGTC TGGTACAGTT AAATTCGGGG CGTGTAAGTT
  ACCACTGCAA GTAACCCGGG GACATCACAG TCATGTATAT TTCAATATGT AATTTATTAG
  W
  GGAAAGCGCC ATTTCTTTCT TTGTCACTCA GTTTAACTGA ATAAAAAGCA CAGTCCTACA
  ACTTATAAAG ATTGGTAAAT ATGTATAAAA TTGGTAACGA CTAGTATACA TTTCCTTCCT
  TTCTTCCTTC CTTCCTTTCT TTCTTTCTTT CTTTCTTTCT TTCTTTCTTT CCTAAATTAA
  TACAGAAAAG CAAAATTTTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354128832	MGP_WTSI_2_59000658	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236955387					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354128832	MGP_WTSI_2_59000658	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:58992945 () rs orientation: forward

Symbol	Name	Function Class
Ccdc148	coiled-coil domain containing 148	1918 bp upstream
Cpgi11668	CpG island 11668	403 bp distal
Pkp4	plakophilin 4	within coordinates
Rr56883	regulatory region 56883	within coordinates
Rr396983	regulatory region 396983	1761 bp downstream
Tssr17839	transcription start site region 17839	1776 bp downstream
Tssr17840	transcription start site region 17840	1720 bp downstream
Tssr17841	transcription start site region 17841	1705 bp downstream
Tssr17842	transcription start site region 17842	1547 bp downstream
Tssr17843	transcription start site region 17843	965 bp downstream
Tssr17844	transcription start site region 17844	628 bp downstream
Tssr17845	transcription start site region 17845	354 bp downstream
Tssr24158	transcription start site region 24158	1966 bp upstream
Tssr24159	transcription start site region 24159	1938 bp upstream