rs236962003 SNP Detail

Summary

• ID
  rs236962003
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:129157651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTGTGGC TCCTGACCTT
  GAAATGCGTT TCCCAATGAG ATTTTGTTAG GCCCTGAGCC AACCAAGCGT GTGTGTATGT
  ACAGAAAGGA GGAGCTACAG GATTAGCTAA ATACTGAAAC CTCCCCACGT ATTTGTGCCT
  CTCAGCTTTC AAGTTTCAAT CCTGTAGTGG AAACTCAGCT CCTCAGCTCT GAGATGTGTG
  Y
  CACAAAGGCT TCCCTACCTA TGCTTAGTCC CACAGGCAGC CCGCAGGAGG TAGAAGTGGG
  TAAGTATTCA ATAGTATTTG AACCAATGGG AGGGGCAGAG AGGAGTTTCA AACAGGGCAG
  GAAGGCAAAA GAGTTGAACC TTGAACAAAA GATTAAGAAC AGAAGGGCGT CTGTGAGCCC
  GTCACTGTGG GTCTGCAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370045171	MGP_WTSI_6_129130706	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236962003					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370045171	MGP_WTSI_6_129130706	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:129157651 () rs orientation: forward

Symbol	Name	Function Class
Clec2d	C-type lectin domain family 2, member d	within coordinates
Gm53342	predicted gene, 53342	within coordinates
Gm68195	predicted gene, 68195	323 bp downstream
Rr368193	regulatory region 368193	within coordinates
Rr639386	regulatory region 639386	1202 bp distal
Rr639387	regulatory region 639387	63 bp distal
Rr639388	regulatory region 639388	196 bp distal
Rr639389	regulatory region 639389	within coordinates
Rr639390	regulatory region 639390	956 bp proximal
Rr639391	regulatory region 639391	1803 bp proximal
Tssr59096	transcription start site region 59096	58 bp downstream
Tssr59097	transcription start site region 59097	32 bp downstream
Tssr59098	transcription start site region 59098	229 bp upstream
Tssr59099	transcription start site region 59099	263 bp upstream
Tssr59100	transcription start site region 59100	287 bp upstream
Tssr59101	transcription start site region 59101	580 bp upstream
Tssr59102	transcription start site region 59102	655 bp upstream
Tssr59103	transcription start site region 59103	1164 bp upstream
Tssr59104	transcription start site region 59104	1234 bp upstream
Tssr59105	transcription start site region 59105	1990 bp upstream