rs236962007 SNP Detail

Summary

• ID
  rs236962007
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:58767259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTAAGATT CTAGGTTGGA
  TCTCAGCACC ATGAGCAGAT GATCATGAAC TTCACAAGTT TACGAGTCTC TCTGGATGGT
  GTACCAAGTG GCTTTGTGTG CAGGATGCTT GGGATTATTG TTCTTAATAA TTTTTCACAT
  GTCTAGCCAC GTGACCTCAC ACAGCTGGGG AACACTAGCT GGGTCTCGGA GACTGGGTTC
  R
  GGTGTAGTGA GTGGGAATGG GGTGTCAGGC CCTCTGGAAG GGTCTGGCAA TTGGGATGAA
  GCAATTGACC ATCTGTTCAG CTGGCTTTCC GTCAGCACAG GCCAGGTAGC TGGCTTAGGG
  CAAAAAGGAA TGAAAGGCTC TCACTTCCCT AAGAATGGTA CAGTCTTCCC GGAAAAACAG
  CCTTCCACAC AGTACCACGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349771956	MGP_WTSI_1_58784944	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236962007					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349771956	MGP_WTSI_1_58784944	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58767259 () rs orientation: forward

Symbol	Name	Function Class
Cflar	CASP8 and FADD-like apoptosis regulator	within coordinates
Rr411489	regulatory region 411489	1829 bp distal
Rr411490	regulatory region 411490	644 bp distal
Rr411491	regulatory region 411491	167 bp proximal
Tssr6802	transcription start site region 6802	1994 bp downstream
Tssr6803	transcription start site region 6803	1922 bp downstream
Tssr6804	transcription start site region 6804	1878 bp downstream
Tssr6805	transcription start site region 6805	839 bp downstream
Tssr6806	transcription start site region 6806	515 bp upstream
Tssr6807	transcription start site region 6807	552 bp upstream
Tssr6808	transcription start site region 6808	613 bp upstream
Tssr6809	transcription start site region 6809	1457 bp upstream
Tssr11791	transcription start site region 11791	988 bp upstream