rs236969623 SNP Detail

Summary

• ID
  rs236969623
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94968085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACCGCCAG CACCGCGATC
  CCCGCTGGAC AAACCAGGCG TTGGCTCTTC GGAGAACGGT CGACTGTGTT CGGCTGCCTG
  GAATGCGGAC CTCCGCAGTG ATGTGAGTCC CTAAGAGGTG ACTGCGGGTC TCCGGACTTA
  ACTTCTTCGT GCTAAGTACA CTCAATGTTA TGTATGAAGG AGTATTTCTC CTGCCCACCC
  R
  CCTCCTCTCA TCCTGTTCCC TGCTGGAAGC GGCTCCTCCG CAAAGCCAGA CAGATATTTA
  GTGGTGGTGA TGACAACCCA TCAGAAATAA TAATTAGCAA AGGGCAGCCT TTGTCTCGAA
  GCAGTGAATG GGACCTCAGC CCCCACAGGT GTGATGCTGG GTGGAGACAG GTGGGCTTGA
  CTCAAAGATC TCACTATCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384338890	MGP_WTSI_11_94938573	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236969623					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384338890	MGP_WTSI_11_94938573	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94968085 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3575	CpG island 3575	within coordinates
Gm53645	predicted gene, 53645	within coordinates
Gm57362	predicted gene, 57362	within coordinates
Itga3	integrin alpha 3	458 bp upstream
Rr454944	regulatory region 454944	1603 bp distal
Rr454945	regulatory region 454945	821 bp distal
Rr454946	regulatory region 454946	1085 bp distal
Rr454947	regulatory region 454947	819 bp distal
Rr454948	regulatory region 454948	556 bp distal
Rr454949	regulatory region 454949	288 bp distal
Rr454950	regulatory region 454950	within coordinates
Rr454951	regulatory region 454951	377 bp proximal
Rr454952	regulatory region 454952	881 bp proximal
Rr454953	regulatory region 454953	1903 bp proximal
Tssr3652	transcription start site region 3652	643 bp upstream
Tssr104346	transcription start site region 104346	308 bp downstream
Tssr110254	transcription start site region 110254	670 bp upstream
Tssr110255	transcription start site region 110255	604 bp upstream
Tssr110256	transcription start site region 110256	537 bp upstream
Tssr110257	transcription start site region 110257	441 bp upstream