rs236971843 SNP Detail

Summary

• ID
  rs236971843
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134653340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGATGGGTT CAAGTGTCAG
  AGTTTATGTT TACAGACTAA AGCTTAGCCA TTGTTGAAGG GAGTTGGTGT GCATGCTAGA
  GTTTTGGGCT AGGGACTGTT TGTGTAAGGC AGTGACAGCT CAGCAGCCTA GAGGCACTGT
  CATGGTGGGC ATCTGTGATC TAGACGTCCT TCACATGATA TATGCAATAT ATTCCAGATG
  K
  TTTGAGAGAT TACAGAAGAA GAGGCCTGCT TCCCTTGCAG ATAAGTTTAT TACGATTCTC
  CAGAACTACA GAGGGTGTGC ATTGGCACAC TGCAGTATAT AAGTTAAACC TGGATCTTAA
  GGTTAATAAT TTGGGCTGGG ATGTAACTCA GTTGTAGAGA ACTTTGTCAG GGTGCATAGT
  ACCTGGGGTT AGCTCCCAGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363351925	MGP_WTSI_4_134481944	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236971843					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363351925	MGP_WTSI_4_134481944	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134653340 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15053	CpG island 15053	1365 bp distal
Rsrp1	arginine/serine rich protein 1	within coordinates
Tssr39584	transcription start site region 39584	1964 bp downstream
Tssr39585	transcription start site region 39585	1930 bp downstream
Tssr39586	transcription start site region 39586	1808 bp downstream
Tssr39587	transcription start site region 39587	1740 bp downstream
Tssr39588	transcription start site region 39588	1654 bp downstream
Tssr39589	transcription start site region 39589	1629 bp downstream
Tssr39590	transcription start site region 39590	1602 bp downstream
Tssr39591	transcription start site region 39591	562 bp downstream
Tssr39592	transcription start site region 39592	39 bp upstream
Tssr39593	transcription start site region 39593	561 bp upstream
Tssr39594	transcription start site region 39594	646 bp upstream
Tssr39595	transcription start site region 39595	673 bp upstream
Tssr43947	transcription start site region 43947	1339 bp downstream