rs236975302 SNP Detail

Summary

• ID
  rs236975302
• Variation Type
  SNP
• Alleles
  A/C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:75153494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTTTCCT TGCTATTTCA
  TAACTGGAAT TTTGCTACTG TTGTAAATTG TAATGTAAAT ATCTGTTGCC TGATGGTCTT
  CGGTGACGCT TGGGGAAGGG TCATTTGACC CTGAAGGGGT CCCAATCCTC AGGTTGAGAC
  GCACTGGAGG TATGACTCAG TAGTAGAATC CTTGCCTGGC ACGTACAAGG TCCTGGATTC
  V
  ATTGTCAGCA TCATGAGGAA GAAAAAAAGA ACAAACACTG AACTAAGTAA GATAATGCTT
  TCTCACATCC CATTTCCAGC TCTGACGAGG CCAGTTTAGT TCTTTCTGCC TTCCTCCTCA
  AGCGCATTCT CCTTCACGAT TATCTTAAAG TAACGGTGAA GTGTAGCTTT TCAGTAGTAC
  CCGCAGGAGG CTGAGGTTCA                                            
  
  V = A/C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401244450	MGP_WTSI_18_75180077	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	G	C	C	G	A	G	G	G	C	G	G	G	G	G	G	C	G	G	C	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236975302					SNP	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	G	C	C	G	A	G	G	G	C	G	G	G	G	G	G	C	G	G	C	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401244450	MGP_WTSI_18_75180077	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:75153494 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10229	CpG island 10229	858 bp distal
Dym	dymeclin	within coordinates
Rr405742	regulatory region 405742	1668 bp downstream
Rr540715	regulatory region 540715	1617 bp distal
Rr540716	regulatory region 540716	551 bp distal
Rr540717	regulatory region 540717	617 bp proximal
Rr540718	regulatory region 540718	1252 bp proximal
Tssr151951	transcription start site region 151951	1723 bp downstream
Tssr151952	transcription start site region 151952	1607 bp downstream
Tssr151953	transcription start site region 151953	1489 bp downstream